Converting HTML5 web application into epub3 format

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i developed a html5 web application using net beans i want to convert it into epub application has javascript.i found that epub2 will not support .js files.i came to know about standard epub3 format(oebps,meta-info,mime)even i refferred all my images and javascript in opf using manifest tag.i validated my file online and got two errors.kindly help me to know whether there is a posssiblity to convert html5 web application into epub3 javascript should work in the epub3 format.let me know about the possibility

It would be hard to help you without getting more information about the errors you got.
In general EPUB3 supports JavaScript and you should be able to convert your HTML5 application to EPUB3.

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