Best Practices for transforming PDFs to ePUB3?

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I'm conducting research on the best methods to transform a heterogenous corpus of books in PDF to EPUB, and I would appreciate any tips, advice, or literature recommendations.

Are there any preferred tools or workflows for transforming PDFs into ePUB? For reflowable text, is the best route a basic TEI schema, JATS, or another XML format?

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